BRIF and journal editors
Contributed by: | Laurence Mabile |
Originally posted: | 3rd March 2011: 9:37 am |
Last updated: | 17th November 2014: 4:02 pm |
Short URL: | https://gen2phen.org/node/35827 |
BRIF - Bioresource Research Impact Factor |
Public - anyone can view |
chaired by Anne Cambon-Thomsen () and Elena Bravo ()
Participants: Federica Napolitani, Anna Maria Rossi, Paola De Castro and Laurence Mabile
This subgroup is in charge with connection to editors for standardization of ID citation and for BRIF implementation when assessed, with one specific task on proposals for amending the editorial guidelines (Uniform Requirements and Cope).
Your comments are very welcome below.
If you wish to actively participate to this subgroup, please inform us by mail at:
cc: laurence.
PROPOSAL TO ICMJE:
Please find herein 2 files:
- the proposal to the International Committee of Medical Journal Editors (ICMJE) for possible insertions in a future amended version of uniform requirements
- the accompanying letter.
PROPOSAL TO COPE:
Please read hereafter the submission proposal to the Committee of Publication Ethics (COPE) consideration, an issue associated with the use of bioresources which has a great relevance on publication ethics.
https://gen2phen.org/document/brif-proposal-committee-publication-ethics-cope
Your comments are welcome.
_________Rome, 20-21 June 2013, BRIF Meeting:
Agenda and workshop report are attached below.
_________European Commission Public Consultation on Open Research Data, Brussels, 2 July 2013
Agenda and slides ( from P. De Castro) are attached below.
_______BRIF "Contact with editors" sub-group Meeting, 28-29 August 2014, Toulouse
Meeting highlights attached below.
Attachment | Size |
---|---|
AGENDA workshopBRIF_editorial_21June2013-Rome.pdf | 396.02 KB |
ROME WORKSHOP REPORT.pdf | 55.01 KB |
2013 07 02_agenda_open-research-data_consultation.pdf | 78.88 KB |
De Castro ECconsultation ORD_ Jul_2013_3.pdf | 1.24 MB |
Highlights Toulouse meeting 28-29 08 2014 rev.pdf | 598.59 KB |
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#1 Hello everyone I am just
Hello everyone
I am just testing if the system is working
#2 Hi everybody, So, now that
Hi everybody,
So, now that the system is working, I am posting here the brief note about tasks, timing etc, written along with Elena, Paola and Anna Maria (my colleagues at ISS who are members of this subgroup).
It is important to trace down the different steps we should follow.
Please feel free to comment, improve etc.
Task: Sensitizing journal editors to BRIF issues and modifying editorial guidelines
Objectives
The subgroup will study and agree on a proposal to submit to international associations, committees and other organisations of scientific editors, with the aim to sensitize them on BRIF issues and proceed to amend their editorial guidelines accordingly.
Priorities
The International Committee of Medical Journal Editors (ICMJE) and the Committee on Publication Ethics (COPE) are internationally recognized as associations of utmost importance in the biomedical editorial field. Therefore, as a first step, they should be both contacted by this BRIF subgroup for the amendment of:
• Uniform Requirements for Manuscripts Submitted to Biomedical Journals (URM) (http://www.icmje.org/)
• COPE guidelines (http://publicationethics.org/).
The BRIF subgroup should elaborate and agree on a document to submit to ICMJE and COPE:
1. describing BRIF as a project and the aim of this subgroup
2. sensitizing on the problems concerning the difficulty of tracing citations related to bioresources in biomedical journals
3. including a practical proposal (sentences, paragraphs, to insert in specific sections of both guidelines).
Other associations of scientific editors like the European Association of Science Editors (EASE), the World Association of Medical Editors (WAME), the Council of Science Editors (CSE) etc. or other relevant assoicaitons such the European Science Foundation (ESF), the International Council for Science (ICSU), the European Research Council (ERC) etc. could also be contacted afterwards on the basis of the feedback from the ICMJE and COPE.
Preliminary time schedule
1. members of the subgroup should agree with Objectives and Priorities (by the end of March)
2. the ISS working group shall elaborate a document (by the end of April)
3. the document will be forwarded for discussion and approval within the subgroup and to the whole BRIF group according to the general procedure of all subgroups (by the end of May)
4. the final version will be sent to ICMJE and COPE (June)
5. further discussion and feedback
#3 Hi all! happy to join group
Hi all!
happy to join group and test the posting system.
The National Library of Medicine has recently up-dated the list of Research reporting guidelines and initiatives by Organization http://www.nlm.nih.gov/services/research_report_guide.html.
Once we agree on "the document" to be submitted, we might select the most appropriate organizations from the NLM list able to receive "the document" and possibly modify their giudelines according to our suggestions.
Best wishes
Paola
PS Is it there any chance that the most recent postings appear as first in the list?
#4 Hi Gudmundur thank you for
Hi Gudmundur
thank you for your suggestions!
Actually we just started commenting on this page and are still getting used to the system.
Cheers
Federica
#5 Hello everyone we just
Hello everyone
we just started discussing about which proposal to submit to the ICMJE for amending the URM.
I am adding a paragraph on the "edit" page (hope it will work) for your comments/suggestions.
This is just a very first part of our task, we shall keep on studying how bioresources are cited in journal articles (and in NLM citing medicine, MESH etc)
Cheers
#6 The Uniform Requirements for
The Uniform Requirements for Manuscripts Submitted to Biomedical Journals are available at http://www.icmje.org/
Below is a first draft of proposed insertions which regard, for the moment, only two sections:"Contributors listed in the Acknowledgements" and "Methods".
II. ETHICAL CONSIDERATIONS IN THE CONDUCT AND
REPORTING OF RESEARCH
II A. Authorship and Contributorship
II. A. 2. Contributors Listed in Acknowledgments
All contributors who do not meet the criteria for authorship
should be listed in an acknowledgments section.
Examples of those who might be acknowledged include a
person who provided purely technical help, writing assistance,
or a department chairperson who provided only general
support. Editors should ask corresponding authors to
declare whether they had assistance with study design, data
collection, data analysis, or manuscript preparation. If such
assistance was available, the authors should disclose the
identity of the individuals who provided this assistance and
the entity that supported it in the published article. Financial
and material support should also be acknowledged.
Groups of persons who have contributed materially to
the paper but whose contributions do not justify authorship
may be listed under such headings as “clinical investigators”
or “participating investigators,” and their function
or contribution should be described—for example, “served
as scientific advisors,” “critically reviewed the study proposal,”
“collected data,” or “provided and cared for study
patients.” Because readers may infer their endorsement of
the data and conclusions, these persons must give written
permission to be acknowledged.
SENTENCE TO INSERT: ” Biobankers should always be acknowledged for their contribution in providing samples or data useful for the conduct of the study and the name of the Biobank and/or of the providing institution should also be reported here in extense"
Because readers may infer their endorsement of
the data and conclusions, these persons must give written
permission to be acknowledged.
IV. MANUSCRIPT PREPARATION AND SUBMISSION
IV. A. Preparing a Manuscript for Submission to a
Biomedical Journal
IV. A. 6. Methods
SECTION TO INSERT:
IV.A.6.d Bioresources
Describe precisely the type of sample and/or of data provided by a Biobank. Include a brief description of the Biobank itself containing all information useful for its correct identification.
When possible …….
Avoid…..
[please help to complete this section, make inclusions/suggestions, also on terminology (just remember that we are in the “Methods” section of the paper]
#7 Hy everybody! I thank all of
Hy everybody!
I thank all of you to have started the task of completing suggestions to integrate the Uniform Requirements for Manuscripts Submitted to Biomedical Journals in order to take into the right account the quality of the bioresources and processes in the definition of the scientific excellence of a paper.
I would like to contribute to this point.
First suggestion would be, also in this context, the “bioresources” should be defined. Although several definition may be possible, one of the most complete and accepted one, currently is the definition made by the OCSE and taken by BBMRI. What do you think?
Secondly, it is well known that biobanking infrastruring, both at level of national or international network, offer an additional different degree of guaranties of the procedures for selection and use of bioresources.
Third, the National Networks of biobanks (i.e. National Node), pan- European(BBMRI) or International infrastructures provide a number of specifically complemented and innovative components that guarantee the use of bioresuorces into a properly embedded European ethical, legal and societal frameworks.
To me these concept should also be, in some way, included in integration at the section IV.A
IV.A.2 Title page
Biobank(s) resources source(s). A section related to the sources of samples and bioresources, could integrate the list in the first page
IV.A.2 X.
Biobank(s) resources source(s). The source(s) Bioresources, intended as collections of culturable organisms (e.g. micro-organisms, plant, animal and human cells), replicable parts of these (e.g. genomes, plasmids, viruses, cDNAs), viable but not yet culturable organisms, cells and tissues, as well as databases containing molecular, physiological and structural informationi” have to be listed on the front page or to refer to a table inserted in the text..
IV.A.2 XX.
Infrastructure procedure. Whether the procedure for the realization of the project has been set into a National, European and/or international framework, this should be listed in a separate sentence of the front page.
Section IV.A.6 Methods
Section IV.A.6 Selection and description of participants
For the projects that state that have been realized under the “aegis” of either National, European and/or international framework(s), the relative number of the project should be reported.
#8 Hi Elena. I appreciate your
Hi Elena.
I appreciate your comments. Indeed we lacked that information. Now that the work is taking shape, I would suggest to work on a single document including all suggestions to make easier to follow all possible amendments. I will try to make it in the wiki area, but I am not sure if I succeed.
Best wishes
Paola
#9 I look for your comments: if
I look for your comments: if you think the wiki is clunky, we shall use google doc, just let me know before I go on.
Best
Paola
#10 I thank Anne Cambon - Thomsen
I thank Anne Cambon - Thomsen for her precisation.
I perfectly agree about the concept that we shall consider not the OECD biobank definition, but better the genetic research databases HBGRD. The important item is to have a definition, which also the uniform requirement can refer to.
If the actual definition is in a differnt part of the document, we will refer to it. You will to us where we can find this definition.
I also thank Paola, for the idea to have a unique document. Of course, we will have a unique document, defined by us, but I believe that at this point that the discussion is so open, we should insert our comments as they come to us. Then we will reorganize all the suggestions by others and by us in a unique document.
#11 Hi Elena, I think that the
Hi Elena, I think that the use of a correct terminology is extremely important. Therefore on the basis of the comments that have been posted here, we shall continue on working on the URM next week, together.
By the end of April we should have this proposal for the updated version of the URM. Personally I think that it will already be a very good result if the ICMJE will approve to include even a couple of paragraphs on bioresources in the guidelines.
Happy Easter to everyone
Federica
#12 Dear Collegues, I actually
Dear Collegues, I actually share the exigency reported from my subgroup and Federica that to continue our work on BRIF and journal editors we shall refer somehow to a definition of “bioresource”. I expect that that BRIF-work will produce a complete and more precise definition of “bioresources” in other sections of the final document. However, to carry on our bit on “BRIF and journal editors” we will “temporarily” include a very short ( that can be , anyway modified, when all documents will be harmonized) definition of “bioresource”.
As we are going to re-organize our document, tomorrow I expect that prompt reply will help us on this point, however, my preliminary suggestion for this subgroup could be: “Bioresources include both biological samples with associated data (medical/epidemiological, social) and biomolecular research tools. The biosamples and biomolecular resources include any “physical” specimen derived from biological organisms, as well antibody, affinity binder collections, clone collections, siRNA and microarrays libraries. Research tools include any data, directly or indirectly derived from biosamples such as databases, locus/imagine specific-databases, registries of disease patients and any specific tools for molecular characterization of biobanked samples”.
Thanks, Elena
#13 Hello Paola, I understand you
Hello Paola,
I understand you will all need to work on a single document at one point; I have asked the G2P knowledge center's webmaster about the best way to do this; I will then come back to you as soon as I have answers...
Best,
Laurence
#14 Hello Anne and all, I will be
Hello Anne and all,
I will be at ESHG and would be happy to be involved.
Susan
#15 Dear Anne, dear all. the
Dear Anne, dear all.
the national Nodes and BioShare have a restrict meeting the days of ESHG, then I will not be present. However, Federica organized a meeting last week and we planned the reorganization of our documents, that we will post soon.
#16 Dear Anne, dear all. the
Dear Anne, dear all.
the national Nodes and BioShare have a restrict meeting the days of ESHG, then I will not be present. However, Federica organized a meeting last week and we planned the reorganization of our documents, that we will post soon.