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Functional Prediction

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New sequencing techniques has dramatically increased the data available for genomic research. Especially useful these new techniques (like re-sequencing) have been in mapping and detecting CNVs and other genome structural variants where they have made the difficult analysis more feasible and less error prone. Several computational methods have been developed which rely on these new technologies. In other study aspects, like predicting the disease susceptibility of missense mutations, effect of mutations affecting mRNA splicing and epistatic effects of several mutants, a different kind of need has rised. Increasing efforts have been dedicated to find the relevant, disease causing, mutations in the large amount of data available currently. This has led to the vast amount of new methods which aim to solve the problem of predicting which mutations have effect on disease risk. The purpose of the group is to provide concise information on pathogenicity prediction tools, methods and services.

Latest posts
Comments Posted by Post: Public Last comment
Wiki Page

Protein level predictions 7 - Aggregation prediction

Administrator
posted 6th Oct 2009
updated 12th Feb 2016
True 6th Oct 2009
by Päivi Rosenström
Wiki Page

Tools predicting the overal functional consequences of SNPs

Administrator
posted 2nd Dec 2009
updated 12th Jul 2011
False 2nd Dec 2009
by Päivi Rosenström
Wiki Page

Protein level predictions 1 - Pathogenic or not predictors

Administrator
posted 6th Oct 2009
updated 6th Oct 2010
False 6th Oct 2009
by Päivi Rosenström
Wiki Page

Tools and methods for mapping genomic structural variation

Administrator
posted 11th Sep 2009
updated 6th Oct 2010
False 11th Sep 2009
by Administrator
Wiki Page

SNP identification and annotation tools

Administrator
posted 12th Apr 2010
updated 6th Oct 2010
False 12th Apr 2010
by Päivi Rosenström
Wiki Page

Meta tools

Administrator
posted 11th Sep 2009
updated 29th Sep 2010
False 11th Sep 2009
by Päivi Rosenström
Wiki Page

Protein level predictions 8 - Other tools predicting protein functional changes

Administrator
posted 6th Oct 2009
updated 28th Sep 2010
False 6th Oct 2009
by Päivi Rosenström
Wiki Page

Tools predicting problems in mRNA splicing

Administrator
posted 11th Sep 2009
updated 22nd Sep 2010
False 11th Sep 2009
by Päivi Rosenström
Wiki Page

Prediction tools

Administrator
posted 2nd Sep 2009
updated 22nd Sep 2010
False 2nd Sep 2009
by Päivi Rosenström
Wiki Page

Tools considering epistatic effects

Administrator
posted 11th Sep 2009
updated 16th Sep 2010
False 11th Sep 2009
by Päivi Rosenström
Wiki Page

Protein level predictions 4 - Stability changes prediction

Administrator
posted 6th Oct 2009
updated 19th Aug 2010
False 6th Oct 2009
by Päivi Rosenström
Wiki Page

Protein level predictions 3 - Conservation analysis

Administrator
posted 6th Oct 2009
updated 12th Aug 2010
False 6th Oct 2009
by Päivi Rosenström
Wiki Page

Protein level predictions 6 - Analysis of interatomic contacts

Administrator
posted 6th Oct 2009
updated 8th Mar 2010
False 6th Oct 2009
by Päivi Rosenström
Wiki Page

Protein level predictions 2 - Sequence alignment methods

Administrator
posted 6th Oct 2009
updated 8th Mar 2010
False 6th Oct 2009
by Päivi Rosenström
Wiki Page

Protein level predictions 5 - Disorder prediction

Administrator
posted 6th Oct 2009
updated 8th Mar 2010
False 6th Oct 2009
by Päivi Rosenström
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Functional Prediction

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